Package: climniche 0.3.6

climniche: Niche Relative Climate Exposure

Quantifies projected climate exposure relative to a species' current realised climatic niche. Occurrence records, range maps, and binary or continuous species distribution model outputs can define the current reference. The package reports Climatic Displacement, Niche Distance Shift, Climatic Reconfiguration and Niche Boundary Exceedance for single projections, ordered time series and climate model ensembles. A two-objective Pareto screening compares one climatic quantity with an ecological or management criterion without collapsing them into a weighted score. Cell-level terms decompose change in squared niche distance among fitted climate variables.

Authors:Bohao He [aut, cre]

climniche_0.3.6.tar.gz
climniche_0.3.6.zip(r-4.7-any)climniche_0.3.6.zip(r-4.6-any)climniche_0.3.6.zip(r-4.5-any)
climniche_0.3.6.tgz(r-4.6-any)climniche_0.3.6.tgz(r-4.5-any)
climniche_0.3.6.tar.gz(r-4.7-any)climniche_0.3.6.tar.gz(r-4.6-any)
climniche_0.3.6.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
climniche/json (API)

# Install 'climniche' in R:
install.packages('climniche', repos = c('https://bohao0813.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bohao0813/climniche/issues

Pkgdown/docs site:https://bohao0813.github.io

On CRAN:

Conda:

climate-changeconservationecologyniche-modelingspecies-distribution-models

4.90 score 1 stars 6 scripts 301 downloads 38 exports 0 dependencies

Last updated from:b23c83aab1. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK187
source / vignettesOK181
linux-release-x86_64OK216
macos-release-arm64OK114
macos-oldrel-arm64OK116
windows-devel-x86_64OK297
windows-release-x86_64OK387
windows-oldrel-x86_64OK258
wasm-releaseOK114

Exports:boundary_exceedanceclimniche_change_rateclimniche_departureclimniche_dominant_contributionclimniche_model_agreementclimniche_priorityclimniche_range_summaryclimniche_reportclimniche_series_reportclimniche_series_tableclimniche_summaryclimniche_summary_figure_dataclimniche_tablefit_climnichefit_climniche_rasterfit_climniche_referencefit_climniche_seriesfit_climniche_terraniche_metricniche_percentileniche_potentialniche_radiusplot_climniche_departure_mapplot_climniche_distributionplot_climniche_dominant_contributionplot_climniche_exposureplot_climniche_mapplot_climniche_mapsplot_climniche_priorityplot_climniche_reportplot_climniche_summary_figureplot_climniche_timeplot_climniche_variable_contributionproject_climnichesimulate_climnichevariable_contributionwrite_climniche_reportwrite_climniche_series_report

Dependencies:

Ecological screening of climate exposure
Pareto screening | Mediterranean anchovy | Decision planes and maps
Rendered fromclimniche-priority.Rmdusingknitr::rmarkdown

Last update: 2026-07-23
Started: 2026-07-22

Examples
Prepared inputs | Fit the exposure model | Niche-relative decomposition | Mediterranean maps | Summary figure
Rendered fromclimniche-examples.Rmdusingknitr::rmarkdown

Last update: 2026-07-23
Started: 2026-05-26

Exposure through time
Fit one climatic reference | Range-level exposure | Persistent Niche Boundary Exceedance | Report
Rendered fromclimniche-through-time.Rmdusingknitr::rmarkdown

Last update: 2026-07-23
Started: 2026-07-23

Spatial climatic contributions
Cell level contributions | Mediterranean pattern
Rendered fromclimniche-contributions.Rmdusingknitr::rmarkdown

Last update: 2026-07-23
Started: 2026-07-22

Readme and manuals

Help Manual

Help pageTopics
Niche Boundary Exceedanceboundary_exceedance
Summarise interval changes in range summaries of Niche Boundary Exceedanceclimniche_change_rate
Summarise Niche Boundary Exceedance through timeclimniche_departure
Summarise dominant climatic contributions by cellclimniche_dominant_contribution summary.climniche_contribution
Summarise agreement among projected climate modelsclimniche_model_agreement
Screen ecological criteria against climate exposureclimniche_priority summary.climniche_priority
Summarise Niche Boundary Exceedance across a study domainclimniche_range_summary
Build a climniche reportclimniche_report
Build a report for a climniche time seriesclimniche_series_report
Extract a long table from a climniche seriesclimniche_series_table
Summarise climniche resultsclimniche_summary
Build data for the climniche summary figureclimniche_summary_figure_data
Extract a tidy climniche tableclimniche_table
Fit niche relative climate exposure from matricesfit_climniche
Fit climniche to raster datafit_climniche_raster
Fit a current climatic niche referencefit_climniche_reference
Fit niche relative climate exposure through timefit_climniche_series
Fit climniche to terra raster datafit_climniche_terra
Build a climatic sensitivity metricniche_metric
Niche percentile shiftniche_percentile
Squared niche distanceniche_potential
Niche radiusniche_radius
Map Niche Boundary Exceedance through timeplot_climniche_departure_map
Plot a climniche reported quantity distributionplot_climniche_distribution
Map dominant climatic contributionsplot.climniche_contribution plot_climniche_dominant_contribution
Plot the climniche exposure planeplot_climniche_exposure
Plot a climniche mapplot_climniche_map
Plot the four reported climniche quantities as mapsplot_climniche_maps
Plot ecological screening of climate exposureplot.climniche_priority plot_climniche_priority
Plot a climniche report figureplot_climniche_report
Plot the climniche summary figureplot_climniche_summary_figure
Plot range summaries of Niche Boundary Exceedance through timeplot_climniche_time
Plot mean climatic variable contributionplot_climniche_variable_contribution
Print a climniche summaryprint.climniche_summary
Project climatic conditions onto a fitted niche referenceproject_climniche
Simulate a minimal niche relative exposure examplesimulate_climniche
Climatic variable contribution to squared niche distance changevariable_contribution
Write a climniche report to Markdownwrite_climniche_report
Write a climniche time series reportwrite_climniche_series_report